New DNA Method Developed for Basmati Rice Varieties


Basmati rice is a high value popular type of rice based on its distinctive organoleptic properties. Approval of varieties meeting the specification laid down for Basmati rice is undertaken by the Indian and Pakistani Export Authorities, and these have been accepted in a UK industry/enforcement Code of Practice (COP). Originally 15 varieties were approved to be marketed as Basmati, 9 of which are allowed to be imported tariff free into the EU as brown rice. New varieties have been bred for higher yield, disease and pest resistance, as well as salt tolerance, and 25 new varieties have been added to the COP. This has resulted in the need for new DNA markers to be investigated as the original DNA microsatellite method cannot identify the new varieties effectively. This study details whether single nucleotide polymorphisms (SNP) and insertion/deletion (InDel) variations developed into KASP™ (Kompetitive Allele Specific PCR; LGC Biosearch Technologies) were more effective DNA markers for all the approved varieties of Basmati rice. The results provide a method that distinguishes 37 Basmati varieties from all others using between 3 and 8 KASP markers out of a pool of 98 informative markers. A reduced set of 24 KASP markers could determine whether a sample belongs to one of eight family groups.

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